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To produce a really good biological theory one must try to see through the clutter produced by evolution to the basic mechanisms lying beneath them, realizing that they are likely to be overlaid by other, secondary mechanisms. What seems to physicists to be a hopelessly complicated process may have been what nature found simplest, because nature could only build on what was already there.
Francis Crick

DNA Helix



Man-made Genetic Instructions Yield Living Cells for the First Time

The first microbe to live entirely by genetic code synthesized by humans is now proliferating in a lab at the J. Craig Venter Institute (JCVI). Venter and his colleagues have used a synthetic genome—the genetic instruction set for life—to build and operate a new Mycoplasma mycoides bacteria, according to an online report published May 20 by Science.

"For the past 15 years, the genomes of many organisms have been sequenced and deposited in databases. We call this digitizing biology," says JCVI molecular biologist Daniel Gibson. "We now show that it is possible to reverse this and synthesize cells starting from this digitized information….We refer to the cell we have created as being a synthetic cell because it is a cell controlled by a genome assembled from chemically synthesized pieces of DNA."
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Fossil Avian Eggshell Preserves Ancient DNA

Owing to exceptional biomolecule preservation, fossil avian eggshell has been used extensively in geochronology and palaeodietary studies. Here, we show, to our knowledge, for the first time that fossil eggshell is a previously unrecognized source of ancient DNA (aDNA). We describe the successful isolation and amplification of DNA from fossil eggshell up to 19 ka old. aDNA was successfully characterized from eggshell obtained from New Zealand (extinct moa and ducks), Madagascar (extinct elephant birds) and Australia (emu and owl). Our data demonstrate excellent preservation of the nucleic acids, evidenced by retrieval of both mitochondrial and nuclear DNA from many of the samples. Using confocal microscopy and quantitative PCR, this study critically evaluates approaches to maximize DNA recovery from powdered eggshell. Our quantitative PCR experiments also demonstrate that moa eggshell has approximately 125 times lower bacterial load than bone, making it a highly suitable substrate for high-throughput sequencing approaches. Importantly, the preservation of DNA in Pleistocene eggshell from Australia and Holocene deposits from Madagascar indicates that eggshell is an excellent substrate for the long-term preservation of DNA in warmer climates. The successful recovery of DNA from this substrate has implications in a number of scientific disciplines; most notably archaeology and palaeontology, where genotypes and/or DNA-based species identifications can add significantly to our understanding of diets, environments, past biodiversity and evolutionary processes.
Read more... [Fossil Avian Eggshell Preserves Ancient DNA]